Index

B

begin() (ndsimulator.engines.Committor method)

C

commit() (ndsimulator.engines.Committor method)

Committor (class in ndsimulator.engines) compute() (ndsimulator.bias.Gaussian method)

D

Dump (class in ndsimulator.io.dump)

dump_data() (ndsimulator.bias.Gaussian method)

F

force() (ndsimulator.bias.Gaussian method)

from_dict() (ndsimulator.ndrun.NDRun class method)

G

Gaussian (class in ndsimulator.bias)

H

Harmonic (class in ndsimulator.bias)

I

initialize() (ndsimulator.engines.Committor method)

M

MD (class in ndsimulator.engines) module ndsimulator.__init__ ndsimulator.bias.gaus ndsimulator.bias.umb ndsimulator.colvars.__init__ ndsimulator.colvars.path ndsimulator.engines.committor ndsimulator.engines.md ndsimulator.io.dump ndsimulator.io.plot ndsimulator.ndrun ndsimulator.potentials.__init__

N

NDRun (class in ndsimulator.ndrun) ndsimulator.__init__ module ndsimulator.bias.gaus module ndsimulator.bias.umb module ndsimulator.colvars.__init__ module ndsimulator.colvars.path module

ndsimulator.engines.committor module ndsimulator.engines.md module ndsimulator.io.dump module ndsimulator.io.plot module ndsimulator.ndrun module ndsimulator.potentials.__init__ module

P

Path (class in ndsimulator.colvars.path)

Path5dto2d (class in ndsimulator.colvars.path) projection() (ndsimulator.bias.Gaussian method)

U

update() (ndsimulator.bias.Gaussian method) (ndsimulator.engines.Committor method)